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Claudia Ball Group

Experimental Translational Oncology (ETO)

Portrait Claudia Ball

Claudia Ball leads the experimental translational oncology group at the National Center for Tumor Diseases (NCT/UCC) Dresden with a focus on functional precision oncology in rare and therapy-resistant cancers. Her team develops and applies patient-derived three-dimensional (3D) tumor models to functionally assess drug response and support personalized treatment decision-making. These efforts aim to complement and extend molecular diagnostics by adding a functional readout of tumor vulnerability, particularly in clinically underserved tumor entities.

The group has established a robust and scalable platform for ex vivo drug sensitivity testing, covering both short-term patient-derived cultures from fresh biopsies and long-term expandable 3D models such as spheroids and organoids. Using automated workflows and dose-response profiling of clinically relevant agents, the drug sensitivity test platform enables high-content phenotypic screening even with minimal starting material. All models are molecularly annotated and linked to patient-specific clinical and histopathological data, creating a resource to identify individual and shared therapeutic vulnerabilities. Drug sensitivity testing results are functionally integrated into a clinical decision-making pipeline within a precision oncology framework for rare cancers. In this context, the group collaborates closely with physician scientist in multidisciplinary tumor boards to inform treatment recommendations based on functional profiling. In addition, the team contributes to the development of tools for interpreting and prioritizing drug sensitivity data for clinical application.

Recent work has functionally validated DNA repair-associated biomarkers, such as the TOP-ART score, in patient-derived models and linked HRD status to specific patterns of sensitivity to PARP inhibitors and DNA-damaging agents. These findings support the refinement of stratification strategies beyond genomic annotation alone.

Beyond classical viability-based response profiling, the group is currently exploring additional layers of information for patient stratification, including label-free imaging as well as and metabolic fingerprinting, to resolve functional heterogeneity, assess drug responses on the single cell level and identify additional layers of vulnerability. These multimodal approaches aim to capture dynamic response patterns, clonal outgrowth, and non-genetic resistance mechanisms in heterogeneous tumor populations. Looking ahead, the group is expanding its efforts to explore the influence of additional biological factors, such as niche signals, on drug response. A particular interest lies in integrating more complex model systems and readouts to better capture inter-patient heterogeneity and guide rational therapy development in rare and in treatment resistant cancers.

Claudia Ball Research: Figure

Future Projects and Goals

Future work will focus on expanding functional precision oncology strategies in rare and therapy-resistant cancers. A key aim is to understand what drives therapy resistance at the single-cell level within heterogeneous tumor populations. This will involve the integration of single-cell molecular and sensitivity profiling to resolve functional subclones and stratify patients more precisely. In parallel, the group plans to develop more complex model systems incorporating stromal and immune components to better reflect in vivo response dynamics. Long-term goals include refining functional predictors of drug sensitivity and translating these insights into clinically actionable, model-based treatment strategies.

Methodological and Technical Expertise

  • Patient-derived 3D patient-derived cancer model (PCM) generation and characterization (organoids, spheroids, short-term PCMs)
  • Ex vivo drug sensitivity testing in miniaturized and automated formats
  • Functional precision oncology data integration and interpretation
  • Analysis of clonal dynamics, therapy response and resistance

CV

Since 03/2019
Head, Patient-derived Tumor Model Unit (PMU), NCT/UCC Dresden

Since 04/2018
Group Leader, Experimental Translational Oncology (ETO), Department of Translational Medical Oncology, NCT/UCC Dresden

2007–2018
Postdoc, Scientific Lab Head, Applied Stem Cell Biology, Department of Translational Oncology, NCT and DKFZ Heidelberg

2003–2007
PhD Student, Institute for Molecular Medicine and Cell Research, Albert-Ludwigs-Universität Freiburg, Germany

1996–2002
Diploma Biology, University Karlsruhe, Germany

Selected Publications

Schöpf J, Uhrig S, Heilig CE, Lee KS, Walther T, Carazzato A, Dobberkau AM, Weichenhan D, Plass C, Hartmann M, Diwan GD, Carrero ZI, Ball CR, Hohl T, Kindler T, Rudolph-Hähnel P, Helm D, Schneider M, Nilsson A, Øra I, Imle R, Banito A, Russell RB, Jones BC, Lipka DB, Glimm H, Hübschmann D, Hartmann W, Fröhling S, Scholl C
Multi-omic and functional analysis for classification and treatment of sarcomas with FUS-TFCP2 or EWSR1-TFCP2 fusions
Nat Commun 15(1):51 doi: 10.1038/s41467-023-44360-2 (2024)

Zowada MK, Tirier SM, Dieter SM, Krieger TG, Oberlack A, Chua RL, Huerta M, Ten FW, Laaber K, Park J, Jechow K, Müller T, Kalxdorf M, Kriegsmann M, Kriegsmann K, Herbst F, Krijgsveld J, Schneider M, Eils R, Glimm H, Conrad C, Ball CR
Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer
Cancers (Basel) 13(5):1097 doi: 10.3390/cancers13051097 (2021)

Heining C, Horak P, Uhrig S, Codo PL, Klink B, Hutter B, Fröhlich M, Bonekamp D, Richter D, Steiger K, Penzel R, Endris V, Ehrenberg KR, Frank S, Kleinheinz K, Toprak UH, Schlesner M, Mandal R, Schulz L, Lambertz H, Fetscher S, Bitzer M, Malek NP, Horger MS, Giese NA, Strobel O, Hackert T, Springfeld C, Feuerbach L, Bergmann F, Schröck E, von Kalle C, Weichert W, Scholl C, Ball CR, Stenzinger A, Brors B, Fröhling S, Glimm H
NRG1 Fusions in KRAS Wild-type Pancreatic Cancer
Cancer Discov 8(9):1087–1095 doi: 10.1158/2159-8290.CD-18-0036 (2018)

Giessler KM, Kleinheinz K, Hübschmann DL, Balasubramanian GP, Dubash TD, Dieter SM, Siegl C, Herbst F, Weber S, Hoffmann CM, Fronza R, Buchhalter I, Paramasivam N, Eils R, Schmidt M, von Kalle C, Schneider M, Ulrich A, Scholl C, Fröhling S, Weitz J, Weichert W, Brors B, Schlesner M, Ball CR*, Glimm H*
Genetic subclone architecture of the tumor-initiating cell compartment in colorectal cancer
J Exp Med 214(7):2073–2088 doi: 10.1084/jem.20162017 (2017)
(*shared senior authorship)

Ball CR, Oppel F, Ehrenberg KR, Dubash TD, Dieter SM, Hoffmann CM, Abel U, Koch M, Werner J, Bergmann F, Ishaque N, Schmidt M, von Kalle C, Scholl C, Fröhling S, Brors B, Weichert W, Weitz J, Glimm H
Succession Of Transiently Active Tumour-Initiating Cell Clones in Human Pancreatic Cancer
EMBO Mol Med 9(7):918–932 doi: 10.15252/emmm.201607354 (2017)